Analysis Type:	PANTHER Enrichment Test (release 20220712)
Annotation Version and Release Date:	GO Ontology database DOI:  10.5281/zenodo.6799722 Released 2022-07-01
Analyzed List:	SDE_Symptomatic_Day_19_vs_Day_18.txt (Sus scrofa)
Correction:	BONFERRONI
Bonferroni count:	3543
GO biological process complete	number	overUnder	pvalue
nitrogen compound metabolic process (GO:0006807)	1693	+	0.00E00
regulation of macromolecule metabolic process (GO:0060255)	1484	+	0.00E00
cellular aromatic compound metabolic process (GO:0006725)	740	+	0.00E00
organic substance metabolic process (GO:0071704)	1873	+	0.00E00
mRNA processing (GO:0006397)	103	+	0.00E00
RNA processing (GO:0006396)	245	+	0.00E00
proteolysis involved in protein catabolic process (GO:0051603)	191	+	0.00E00
nucleic acid metabolic process (GO:0090304)	612	+	0.00E00
nucleobase-containing compound metabolic process (GO:0006139)	709	+	0.00E00
organic cyclic compound metabolic process (GO:1901360)	765	+	0.00E00
cellular macromolecule catabolic process (GO:0044265)	230	+	0.00E00
cellular macromolecule metabolic process (GO:0044260)	657	+	0.00E00
primary metabolic process (GO:0044238)	1785	+	0.00E00
cellular metabolic process (GO:0044237)	1617	+	0.00E00
positive regulation of metabolic process (GO:0009893)	906	+	0.00E00
modification-dependent macromolecule catabolic process (GO:0043632)	178	+	0.00E00
positive regulation of nitrogen compound metabolic process (GO:0051173)	759	+	0.00E00
Unclassified (UNCLASSIFIED)	791	-	0.00E00
macromolecule metabolic process (GO:0043170)	1547	+	0.00E00
macromolecule catabolic process (GO:0009057)	273	+	0.00E00
mRNA metabolic process (GO:0016071)	161	+	0.00E00
RNA metabolic process (GO:0016070)	431	+	0.00E00
modification-dependent protein catabolic process (GO:0019941)	176	+	0.00E00
cellular nitrogen compound metabolic process (GO:0034641)	841	+	0.00E00
RNA splicing (GO:0008380)	90	+	0.00E00
positive regulation of macromolecule metabolic process (GO:0010604)	843	+	0.00E00
protein catabolic process (GO:0030163)	215	+	0.00E00
heterocycle metabolic process (GO:0046483)	735	+	0.00E00
regulation of gene expression (GO:0010468)	1156	+	0.00E00
gene expression (GO:0010467)	528	+	0.00E00
metabolic process (GO:0008152)	1975	+	0.00E00
protein metabolic process (GO:0019538)	1006	+	0.00E00
regulation of metabolic process (GO:0019222)	1588	+	3.93E-13
macromolecule modification (GO:0043412)	807	+	3.93E-13
protein modification process (GO:0036211)	743	+	3.93E-13
positive regulation of cellular metabolic process (GO:0031325)	747	+	3.93E-13
ubiquitin-dependent protein catabolic process (GO:0006511)	173	+	7.87E-13
regulation of nitrogen compound metabolic process (GO:0051171)	1356	+	7.87E-13
regulation of primary metabolic process (GO:0080090)	1385	+	1.57E-12
intracellular transport (GO:0046907)	325	+	1.97E-12
regulation of catabolic process (GO:0009894)	242	+	2.36E-12
positive regulation of biological process (GO:0048518)	1415	+	3.15E-12
post-transcriptional regulation of gene expression (GO:0010608)	128	+	3.15E-12
mRNA splicing, via spliceosome (GO:0000398)	73	+	4.72E-12
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile (GO:0000377)	73	+	4.72E-12
RNA splicing, via transesterification reactions (GO:0000375)	73	+	4.72E-12
regulation of mRNA metabolic process (GO:1903311)	90	+	8.65E-12
cellular response to stress (GO:0033554)	409	+	1.30E-11
regulation of cellular metabolic process (GO:0031323)	1341	+	2.08E-11
positive regulation of cellular process (GO:0048522)	1263	+	3.66E-11
regulation of RNA splicing (GO:0043484)	55	+	1.14E-10
regulation of nucleobase-containing compound metabolic process (GO:0019219)	978	+	1.24E-10
protein modification by small protein conjugation or removal (GO:0070647)	256	+	1.69E-10
positive regulation of nucleobase-containing compound metabolic process (GO:0045935)	493	+	3.78E-10
regulation of RNA metabolic process (GO:0051252)	899	+	7.84E-10
regulation of cellular biosynthetic process (GO:0031326)	944	+	1.30E-09
regulation of macromolecule biosynthetic process (GO:0010556)	924	+	1.39E-09
positive regulation of cellular biosynthetic process (GO:0031328)	463	+	1.42E-09
regulation of biosynthetic process (GO:0009889)	955	+	2.03E-09
regulation of protein metabolic process (GO:0051246)	585	+	2.16E-09
positive regulation of macromolecule biosynthetic process (GO:0010557)	449	+	2.91E-09
positive regulation of biosynthetic process (GO:0009891)	468	+	3.16E-09
regulation of mRNA processing (GO:0050684)	49	+	5.06E-09
regulation of translation (GO:0006417)	97	+	5.79E-09
regulation of cellular amide metabolic process (GO:0034248)	107	+	6.26E-09
regulation of cellular catabolic process (GO:0031329)	193	+	7.20E-09
nucleocytoplasmic transport (GO:0006913)	72	+	9.17E-09
nuclear transport (GO:0051169)	72	+	9.17E-09
response to endoplasmic reticulum stress (GO:0034976)	64	+	9.44E-09
protein localization to organelle (GO:0033365)	167	+	1.02E-08
positive regulation of RNA metabolic process (GO:0051254)	432	+	1.39E-08
negative regulation of gene expression (GO:0010629)	209	+	1.50E-08
macromolecule biosynthetic process (GO:0009059)	314	+	1.71E-08
cellular catabolic process (GO:0044248)	393	+	1.97E-08
negative regulation of macromolecule metabolic process (GO:0010605)	615	+	2.09E-08
macromolecule localization (GO:0033036)	488	+	2.31E-08
regulation of apoptotic process (GO:0042981)	298	+	2.95E-08
regulation of programmed cell death (GO:0043067)	307	+	3.65E-08
negative regulation of metabolic process (GO:0009892)	657	+	5.21E-08
regulation of cellular macromolecule biosynthetic process (GO:2000112)	113	+	6.73E-08
negative regulation of cellular process (GO:0048523)	1023	+	7.14E-08
organonitrogen compound metabolic process (GO:1901564)	1202	+	1.23E-07
establishment of protein localization (GO:0045184)	264	+	2.05E-07
negative regulation of cellular metabolic process (GO:0031324)	508	+	2.15E-07
intracellular protein transport (GO:0006886)	168	+	2.47E-07
regulation of cell death (GO:0010941)	338	+	2.73E-07
negative regulation of biological process (GO:0048519)	1151	+	3.15E-07
proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)	106	+	3.24E-07
cellular nitrogen compound biosynthetic process (GO:0044271)	316	+	3.41E-07
organonitrogen compound catabolic process (GO:1901565)	288	+	5.75E-07
positive regulation of catabolic process (GO:0009896)	125	+	6.31E-07
organic substance catabolic process (GO:1901575)	403	+	6.52E-07
proteasomal protein catabolic process (GO:0010498)	112	+	7.13E-07
response to stress (GO:0006950)	693	+	7.28E-07
histone modification (GO:0016570)	104	+	7.80E-07
negative regulation of nitrogen compound metabolic process (GO:0051172)	531	+	7.99E-07
cellular localization (GO:0051641)	590	+	8.73E-07
establishment of localization in cell (GO:0051649)	408	+	1.04E-06
catabolic process (GO:0009056)	456	+	1.13E-06
protein modification by small protein conjugation (GO:0032446)	209	+	1.35E-06
chromatin organization (GO:0006325)	120	+	1.60E-06
positive regulation of nucleic acid-templated transcription (GO:1903508)	392	+	1.60E-06
positive regulation of DNA-templated transcription (GO:0045893)	392	+	1.60E-06
positive regulation of RNA biosynthetic process (GO:1902680)	396	+	1.81E-06
protein transport (GO:0015031)	243	+	1.91E-06
cellular macromolecule localization (GO:0070727)	404	+	2.75E-06
RNA localization (GO:0006403)	45	+	3.34E-06
DNA-templated transcription (GO:0006351)	130	+	3.37E-06
regulation of mRNA splicing, via spliceosome (GO:0048024)	42	+	3.51E-06
RNA biosynthetic process (GO:0032774)	133	+	4.08E-06
protein localization (GO:0008104)	402	+	4.16E-06
nucleic acid-templated transcription (GO:0097659)	131	+	4.35E-06
nitrogen compound transport (GO:0071705)	325	+	4.39E-06
intracellular signal transduction (GO:0035556)	365	+	5.01E-06
establishment of protein localization to organelle (GO:0072594)	92	+	6.37E-06
positive regulation of protein metabolic process (GO:0051247)	353	+	6.41E-06
protein ubiquitination (GO:0016567)	191	+	7.29E-06
ribonucleoprotein complex subunit organization (GO:0071826)	49	+	8.14E-06
negative regulation of macromolecule biosynthetic process (GO:0010558)	339	+	1.08E-05
regulation of protein catabolic process (GO:0042176)	104	+	1.09E-05
ribonucleoprotein complex assembly (GO:0022618)	47	+	1.27E-05
ribonucleoprotein complex biogenesis (GO:0022613)	129	+	1.39E-05
regulation of immune system process (GO:0002682)	349	+	1.42E-05
negative regulation of cellular biosynthetic process (GO:0031327)	345	+	1.72E-05
regulation of RNA biosynthetic process (GO:2001141)	811	+	2.89E-05
regulation of cellular localization (GO:0060341)	185	+	3.03E-05
proteolysis (GO:0006508)	316	+	3.23E-05
negative regulation of biosynthetic process (GO:0009890)	347	+	3.26E-05
regulation of intracellular transport (GO:0032386)	67	+	3.30E-05
regulation of DNA-templated transcription (GO:0006355)	806	+	3.77E-05
regulation of nucleic acid-templated transcription (GO:1903506)	806	+	3.77E-05
positive regulation of cellular catabolic process (GO:0031331)	106	+	5.54E-05
nucleobase-containing compound biosynthetic process (GO:0034654)	212	+	6.03E-05
regulation of viral process (GO:0050792)	35	+	6.43E-05
immune system process (GO:0002376)	443	+	7.67E-05
regulation of RNA stability (GO:0043487)	49	+	1.11E-04
cellular process (GO:0009987)	3401	+	1.60E-04
regulation of cellular process (GO:0050794)	2436	+	1.65E-04
establishment of RNA localization (GO:0051236)	37	+	1.71E-04
RNA transport (GO:0050658)	37	+	1.71E-04
nucleic acid transport (GO:0050657)	37	+	1.71E-04
negative regulation of cellular amide metabolic process (GO:0034249)	45	+	1.95E-04
cellular biosynthetic process (GO:0044249)	500	+	2.14E-04
organic substance biosynthetic process (GO:1901576)	508	+	2.33E-04
heterocycle biosynthetic process (GO:0018130)	226	+	2.42E-04
negative regulation of cellular macromolecule biosynthetic process (GO:2000113)	46	+	2.77E-04
negative regulation of translation (GO:0017148)	43	+	2.87E-04
regulation of biological process (GO:0050789)	2577	+	2.93E-04
nuclear export (GO:0051168)	42	+	2.94E-04
negative regulation of nucleobase-containing compound metabolic process (GO:0045934)	352	+	3.09E-04
biological regulation (GO:0065007)	2743	+	3.83E-04
negative regulation of protein metabolic process (GO:0051248)	226	+	4.05E-04
protein localization to nucleus (GO:0034504)	49	+	4.56E-04
sensory organ morphogenesis (GO:0090596)	54	-	5.01E-04
biological process involved in interspecies interaction between organisms (GO:0044419)	254	+	5.52E-04
regulation of proteasomal protein catabolic process (GO:0061136)	62	+	5.89E-04
negative regulation of RNA metabolic process (GO:0051253)	316	+	5.96E-04
peptidyl-lysine acetylation (GO:0018394)	44	+	6.00E-04
organic substance transport (GO:0071702)	386	+	6.28E-04
ubiquitin-dependent ERAD pathway (GO:0030433)	30	+	6.42E-04
regulation of immune response (GO:0050776)	211	+	6.46E-04
regulation of viral life cycle (GO:1903900)	29	+	6.69E-04
regulation of mRNA catabolic process (GO:0061013)	48	+	7.16E-04
regulation of chromosome organization (GO:0033044)	71	+	7.37E-04
regulation of protein stability (GO:0031647)	65	+	8.05E-04
cellular response to hormone stimulus (GO:0032870)	75	+	9.34E-04
internal protein amino acid acetylation (GO:0006475)	43	+	9.76E-04
internal peptidyl-lysine acetylation (GO:0018393)	43	+	9.76E-04
negative regulation of apoptotic process (GO:0043066)	175	+	1.00E-03
biosynthetic process (GO:0009058)	521	+	1.26E-03
regulation of mRNA stability (GO:0043488)	44	+	1.31E-03
ERAD pathway (GO:0036503)	34	+	1.37E-03
histone acetylation (GO:0016573)	41	+	1.40E-03
mRNA transport (GO:0051028)	30	+	1.47E-03
aromatic compound biosynthetic process (GO:0019438)	224	+	1.56E-03
positive regulation of chromosome organization (GO:2001252)	34	+	1.74E-03
positive regulation of transcription by RNA polymerase II (GO:0045944)	288	+	1.87E-03
protein acetylation (GO:0006473)	49	+	1.98E-03
organic cyclic compound biosynthetic process (GO:1901362)	240	+	2.03E-03
protein acylation (GO:0043543)	60	+	2.07E-03
negative regulation of programmed cell death (GO:0043069)	179	+	2.23E-03
regulation of protein modification by small protein conjugation or removal (GO:1903320)	77	+	2.52E-03
response to hormone (GO:0009725)	101	+	2.55E-03
protein import into nucleus (GO:0006606)	34	+	2.81E-03
import into nucleus (GO:0051170)	34	+	2.81E-03
regulation of translational initiation (GO:0006446)	21	+	2.85E-03
protein modification by small protein removal (GO:0070646)	50	+	2.94E-03
negative regulation of cell death (GO:0060548)	198	+	3.20E-03
regulation of telomere maintenance (GO:0032204)	28	+	3.44E-03
localization (GO:0051179)	940	+	3.49E-03
positive regulation of immune system process (GO:0002684)	212	+	3.55E-03
response to biotic stimulus (GO:0009607)	228	+	3.66E-03
animal organ morphogenesis (GO:0009887)	175	-	4.07E-03
positive regulation of protein catabolic process (GO:0045732)	57	+	4.07E-03
regulation of DNA metabolic process (GO:0051052)	131	+	4.22E-03
regulation of molecular function (GO:0065009)	692	+	4.26E-03
peptidyl-lysine modification (GO:0018205)	87	+	4.35E-03
positive regulation of intracellular transport (GO:0032388)	37	+	4.74E-03
regulation of cellular component organization (GO:0051128)	500	+	4.88E-03
regulation of protein localization (GO:0032880)	160	+	5.11E-03
response to organic substance (GO:0010033)	515	+	5.21E-03
cellular response to topologically incorrect protein (GO:0035967)	29	+	5.32E-03
regulation of proteolysis involved in protein catabolic process (GO:1903050)	70	+	5.39E-03
nucleobase-containing compound transport (GO:0015931)	53	+	5.60E-03
response to topologically incorrect protein (GO:0035966)	34	+	8.52E-03
peptide biosynthetic process (GO:0043043)	72	+	8.53E-03
protein deubiquitination (GO:0016579)	44	+	8.60E-03
regulation of catalytic activity (GO:0050790)	531	+	9.63E-03
cellular response to nutrient levels (GO:0031669)	59	+	1.00E-02
ATP synthesis coupled electron transport (GO:0042773)	17	+	1.05E-02
cellular response to chemical stimulus (GO:0070887)	521	+	1.11E-02
translational initiation (GO:0006413)	23	+	1.13E-02
regulation of cell cycle (GO:0051726)	276	+	1.17E-02
cellular response to organic substance (GO:0071310)	408	+	1.18E-02
translation (GO:0006412)	68	+	1.20E-02
system process (GO:0003008)	231	-	1.42E-02
cell death (GO:0008219)	173	+	1.73E-02
negative regulation of RNA biosynthetic process (GO:1902679)	290	+	2.06E-02
negative regulation of nucleic acid-templated transcription (GO:1903507)	290	+	2.06E-02
negative regulation of DNA-templated transcription (GO:0045892)	290	+	2.06E-02
cellular response to DNA damage stimulus (GO:0006974)	209	+	2.11E-02
cellular response to lipid (GO:0071396)	85	+	2.37E-02
negative regulation of catabolic process (GO:0009895)	81	+	2.64E-02
oxidative phosphorylation (GO:0006119)	18	+	2.70E-02
amide biosynthetic process (GO:0043604)	100	+	2.74E-02
regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032434)	48	+	2.79E-02
regulation of protein modification process (GO:0031399)	376	+	2.88E-02
activation of immune response (GO:0002253)	60	+	3.10E-02
immune response-regulating cell surface receptor signaling pathway (GO:0002768)	51	+	3.16E-02
transport (GO:0006810)	766	+	3.27E-02
response to organonitrogen compound (GO:0010243)	151	+	3.45E-02
regulation of ubiquitin-dependent protein catabolic process (GO:2000058)	54	+	3.64E-02
cellular response to extracellular stimulus (GO:0031668)	66	+	3.65E-02
response to other organism (GO:0051707)	219	+	3.65E-02
response to external biotic stimulus (GO:0043207)	219	+	3.65E-02
establishment of localization (GO:0051234)	815	+	3.72E-02
cellular component organization or biogenesis (GO:0071840)	1282	+	3.98E-02
RNA catabolic process (GO:0006401)	45	+	4.05E-02
regulation of circadian rhythm (GO:0042752)	21	+	4.37E-02
negative regulation of cellular catabolic process (GO:0031330)	57	+	4.57E-02
regulation of response to endoplasmic reticulum stress (GO:1905897)	22	+	4.61E-02
cellular response to oxygen-containing compound (GO:1901701)	165	+	4.76E-02
response to nitrogen compound (GO:1901698)	173	+	4.88E-02
regulation of histone modification (GO:0031056)	43	+	4.93E-02
